Monoallelic Expression

Datasets: all

Gene annotations: v29

MAE results html

Gene annotation v29

• all

MAE files

• Allelic counts located under: /s/project/drop-analysis/processed_data/mae/allelic_counts/
• Results for each sample located under: /s/project/drop-analysis/processed_results/mae/samples/
• Aggregated results located under: /s/project/drop-analysis/processed_results/mae/{DROP_group}/

Quality Control: VCF-BAM matching html

QC Overview all

• all

QC files

• QC matrix located under: /s/project/drop-analysis/processed_results/mae/{DROP_group}/

Analyze Individual Results

MA plot: fold change vs RNA coverage

plotMA4MAE(res_sample, rare_column = rare_column,
           padjCutoff = padjCutoff,
           allelicRatioCutoff = allelicRatioCutoff) + ggtitle(sample)

Alternative vs Reference plot

plotAllelicCounts(res_sample, rare_column = rare_column,
                  padjCutoff = padjCutoff,
                  allelicRatioCutoff = allelicRatioCutoff) + ggtitle(sample)