#================================================== #All numbers are READ count #================================================== Total records: 83918835 QC failed: 0 Optical/PCR duplicate: 36829111 Non primary hits 5904693 Unmapped reads: 2696946 mapq < mapq_cut (non-unique): 1743199 mapq >= mapq_cut (unique): 36744886 Read-1: 18374539 Read-2: 18370347 Reads map to '+': 18372397 Reads map to '-': 18372489 Non-splice reads: 26680949 Splice reads: 10063937 Reads mapped in proper pairs: 36738378 Proper-paired reads map to different chrom:0