#================================================== #All numbers are READ count #================================================== Total records: 123763907 QC failed: 0 Optical/PCR duplicate: 43174367 Non primary hits 7413743 Unmapped reads: 10103186 mapq < mapq_cut (non-unique): 2695363 mapq >= mapq_cut (unique): 60377248 Read-1: 30192247 Read-2: 30185001 Reads map to '+': 30188657 Reads map to '-': 30188591 Non-splice reads: 42018977 Splice reads: 18358271 Reads mapped in proper pairs: 60365738 Proper-paired reads map to different chrom:0