#================================================== #All numbers are READ count #================================================== Total records: 70866647 QC failed: 0 Optical/PCR duplicate: 23361165 Non primary hits 3829379 Unmapped reads: 2331184 mapq < mapq_cut (non-unique): 1585954 mapq >= mapq_cut (unique): 39758965 Read-1: 19881849 Read-2: 19877116 Reads map to '+': 19879454 Reads map to '-': 19879511 Non-splice reads: 28170037 Splice reads: 11588928 Reads mapped in proper pairs: 39751622 Proper-paired reads map to different chrom:0