#================================================== #All numbers are READ count #================================================== Total records: 126514439 QC failed: 0 Optical/PCR duplicate: 45662628 Non primary hits 8232967 Unmapped reads: 4511863 mapq < mapq_cut (non-unique): 2808502 mapq >= mapq_cut (unique): 65298479 Read-1: 32652481 Read-2: 32645998 Reads map to '+': 32649159 Reads map to '-': 32649320 Non-splice reads: 44776648 Splice reads: 20521831 Reads mapped in proper pairs: 65288552 Proper-paired reads map to different chrom:0