#================================================== #All numbers are READ count #================================================== Total records: 79467770 QC failed: 0 Optical/PCR duplicate: 29413761 Non primary hits 4833672 Unmapped reads: 3358803 mapq < mapq_cut (non-unique): 1685318 mapq >= mapq_cut (unique): 40176216 Read-1: 20090093 Read-2: 20086123 Reads map to '+': 20088019 Reads map to '-': 20088197 Non-splice reads: 27813947 Splice reads: 12362269 Reads mapped in proper pairs: 40170106 Proper-paired reads map to different chrom:0