#================================================== #All numbers are READ count #================================================== Total records: 102217806 QC failed: 0 Optical/PCR duplicate: 43545212 Non primary hits 6997648 Unmapped reads: 4794239 mapq < mapq_cut (non-unique): 2368525 mapq >= mapq_cut (unique): 44512182 Read-1: 22260213 Read-2: 22251969 Reads map to '+': 22256095 Reads map to '-': 22256087 Non-splice reads: 28861831 Splice reads: 15650351 Reads mapped in proper pairs: 44493372 Proper-paired reads map to different chrom:0