#================================================== #All numbers are READ count #================================================== Total records: 76775263 QC failed: 0 Optical/PCR duplicate: 24155781 Non primary hits 4793471 Unmapped reads: 3216021 mapq < mapq_cut (non-unique): 1845829 mapq >= mapq_cut (unique): 42764161 Read-1: 21385854 Read-2: 21378307 Reads map to '+': 21381976 Reads map to '-': 21382185 Non-splice reads: 29841311 Splice reads: 12922850 Reads mapped in proper pairs: 42753846 Proper-paired reads map to different chrom:0