#================================================== #All numbers are READ count #================================================== Total records: 75239887 QC failed: 0 Optical/PCR duplicate: 24430219 Non primary hits 4079535 Unmapped reads: 6592144 mapq < mapq_cut (non-unique): 1645925 mapq >= mapq_cut (unique): 38492064 Read-1: 19255046 Read-2: 19237018 Reads map to '+': 19245923 Reads map to '-': 19246141 Non-splice reads: 27423053 Splice reads: 11069011 Reads mapped in proper pairs: 38470600 Proper-paired reads map to different chrom:0