#================================================== #All numbers are READ count #================================================== Total records: 97553942 QC failed: 0 Optical/PCR duplicate: 27375516 Non primary hits 5710486 Unmapped reads: 2412497 mapq < mapq_cut (non-unique): 2363389 mapq >= mapq_cut (unique): 59692054 Read-1: 29848708 Read-2: 29843346 Reads map to '+': 29846076 Reads map to '-': 29845978 Non-splice reads: 42574039 Splice reads: 17118015 Reads mapped in proper pairs: 59682016 Proper-paired reads map to different chrom:0