#================================================== #All numbers are READ count #================================================== Total records: 90483369 QC failed: 0 Optical/PCR duplicate: 32039716 Non primary hits 5266123 Unmapped reads: 3911155 mapq < mapq_cut (non-unique): 1989626 mapq >= mapq_cut (unique): 47276749 Read-1: 23642421 Read-2: 23634328 Reads map to '+': 23638353 Reads map to '-': 23638396 Non-splice reads: 33769241 Splice reads: 13507508 Reads mapped in proper pairs: 47265656 Proper-paired reads map to different chrom:0