#================================================== #All numbers are READ count #================================================== Total records: 95193768 QC failed: 0 Optical/PCR duplicate: 30506580 Non primary hits 4925952 Unmapped reads: 9399283 mapq < mapq_cut (non-unique): 2069421 mapq >= mapq_cut (unique): 48292532 Read-1: 24150197 Read-2: 24142335 Reads map to '+': 24146281 Reads map to '-': 24146251 Non-splice reads: 33478072 Splice reads: 14814460 Reads mapped in proper pairs: 48281088 Proper-paired reads map to different chrom:0