#================================================== #All numbers are READ count #================================================== Total records: 79169242 QC failed: 0 Optical/PCR duplicate: 30732664 Non primary hits 5492834 Unmapped reads: 2656229 mapq < mapq_cut (non-unique): 1876318 mapq >= mapq_cut (unique): 38411197 Read-1: 19207260 Read-2: 19203937 Reads map to '+': 19205631 Reads map to '-': 19205566 Non-splice reads: 25750002 Splice reads: 12661195 Reads mapped in proper pairs: 38406104 Proper-paired reads map to different chrom:0