#================================================== #All numbers are READ count #================================================== Total records: 86500698 QC failed: 0 Optical/PCR duplicate: 32895659 Non primary hits 4591120 Unmapped reads: 4978660 mapq < mapq_cut (non-unique): 1804899 mapq >= mapq_cut (unique): 42230360 Read-1: 21118037 Read-2: 21112323 Reads map to '+': 21115250 Reads map to '-': 21115110 Non-splice reads: 29361402 Splice reads: 12868958 Reads mapped in proper pairs: 42222118 Proper-paired reads map to different chrom:0