#================================================== #All numbers are READ count #================================================== Total records: 163616215 QC failed: 0 Optical/PCR duplicate: 86187003 Non primary hits 12525621 Unmapped reads: 3607772 mapq < mapq_cut (non-unique): 2646742 mapq >= mapq_cut (unique): 58649077 Read-1: 29326221 Read-2: 29322856 Reads map to '+': 29324487 Reads map to '-': 29324590 Non-splice reads: 43099826 Splice reads: 15549251 Reads mapped in proper pairs: 58642186 Proper-paired reads map to different chrom:0