#================================================== #All numbers are READ count #================================================== Total records: 66588834 QC failed: 0 Optical/PCR duplicate: 20683692 Non primary hits 3840814 Unmapped reads: 1655197 mapq < mapq_cut (non-unique): 1610036 mapq >= mapq_cut (unique): 38799095 Read-1: 19401869 Read-2: 19397226 Reads map to '+': 19399530 Reads map to '-': 19399565 Non-splice reads: 27487682 Splice reads: 11311413 Reads mapped in proper pairs: 38791878 Proper-paired reads map to different chrom:0