#================================================== #All numbers are READ count #================================================== Total records: 118175537 QC failed: 0 Optical/PCR duplicate: 45519863 Non primary hits 6763585 Unmapped reads: 5949749 mapq < mapq_cut (non-unique): 2406279 mapq >= mapq_cut (unique): 57536061 Read-1: 28772288 Read-2: 28763773 Reads map to '+': 28767913 Reads map to '-': 28768148 Non-splice reads: 40780337 Splice reads: 16755724 Reads mapped in proper pairs: 57524194 Proper-paired reads map to different chrom:0