#================================================== #All numbers are READ count #================================================== Total records: 82870633 QC failed: 0 Optical/PCR duplicate: 21626638 Non primary hits 5499303 Unmapped reads: 3059134 mapq < mapq_cut (non-unique): 2256241 mapq >= mapq_cut (unique): 50429317 Read-1: 25218841 Read-2: 25210476 Reads map to '+': 25214655 Reads map to '-': 25214662 Non-splice reads: 34898333 Splice reads: 15530984 Reads mapped in proper pairs: 50416716 Proper-paired reads map to different chrom:0