#================================================== #All numbers are READ count #================================================== Total records: 81320827 QC failed: 0 Optical/PCR duplicate: 33169009 Non primary hits 4207159 Unmapped reads: 3510024 mapq < mapq_cut (non-unique): 1555783 mapq >= mapq_cut (unique): 38878852 Read-1: 19441556 Read-2: 19437296 Reads map to '+': 19439386 Reads map to '-': 19439466 Non-splice reads: 27399272 Splice reads: 11479580 Reads mapped in proper pairs: 38872448 Proper-paired reads map to different chrom:0