#================================================== #All numbers are READ count #================================================== Total records: 78420377 QC failed: 0 Optical/PCR duplicate: 28115100 Non primary hits 4580021 Unmapped reads: 4389570 mapq < mapq_cut (non-unique): 1706808 mapq >= mapq_cut (unique): 39628878 Read-1: 19818105 Read-2: 19810773 Reads map to '+': 19814353 Reads map to '-': 19814525 Non-splice reads: 28015251 Splice reads: 11613627 Reads mapped in proper pairs: 39617656 Proper-paired reads map to different chrom:0