#================================================== #All numbers are READ count #================================================== Total records: 58422975 QC failed: 0 Optical/PCR duplicate: 19691408 Non primary hits 3358405 Unmapped reads: 1221126 mapq < mapq_cut (non-unique): 1389363 mapq >= mapq_cut (unique): 32762673 Read-1: 16383249 Read-2: 16379424 Reads map to '+': 16381272 Reads map to '-': 16381401 Non-splice reads: 22935492 Splice reads: 9827181 Reads mapped in proper pairs: 32756952 Proper-paired reads map to different chrom:0