#================================================== #All numbers are READ count #================================================== Total records: 131366811 QC failed: 0 Optical/PCR duplicate: 63386076 Non primary hits 8868245 Unmapped reads: 6784698 mapq < mapq_cut (non-unique): 2342187 mapq >= mapq_cut (unique): 49985605 Read-1: 24996456 Read-2: 24989149 Reads map to '+': 24992789 Reads map to '-': 24992816 Non-splice reads: 35753864 Splice reads: 14231741 Reads mapped in proper pairs: 49973456 Proper-paired reads map to different chrom:0