#================================================== #All numbers are READ count #================================================== Total records: 100999527 QC failed: 0 Optical/PCR duplicate: 51164467 Non primary hits 7820129 Unmapped reads: 7670411 mapq < mapq_cut (non-unique): 1742704 mapq >= mapq_cut (unique): 32601816 Read-1: 16305223 Read-2: 16296593 Reads map to '+': 16300951 Reads map to '-': 16300865 Non-splice reads: 23357382 Splice reads: 9244434 Reads mapped in proper pairs: 32589338 Proper-paired reads map to different chrom:0