#================================================== #All numbers are READ count #================================================== Total records: 76652642 QC failed: 0 Optical/PCR duplicate: 26283739 Non primary hits 4337306 Unmapped reads: 3289952 mapq < mapq_cut (non-unique): 1698067 mapq >= mapq_cut (unique): 41043578 Read-1: 20524378 Read-2: 20519200 Reads map to '+': 20521749 Reads map to '-': 20521829 Non-splice reads: 28834307 Splice reads: 12209271 Reads mapped in proper pairs: 41036046 Proper-paired reads map to different chrom:0