#================================================== #All numbers are READ count #================================================== Total records: 84465608 QC failed: 0 Optical/PCR duplicate: 30896456 Non primary hits 4873108 Unmapped reads: 3767248 mapq < mapq_cut (non-unique): 1839540 mapq >= mapq_cut (unique): 43089256 Read-1: 21547284 Read-2: 21541972 Reads map to '+': 21544617 Reads map to '-': 21544639 Non-splice reads: 30731839 Splice reads: 12357417 Reads mapped in proper pairs: 43081616 Proper-paired reads map to different chrom:0