#================================================== #All numbers are READ count #================================================== Total records: 76935776 QC failed: 0 Optical/PCR duplicate: 25762467 Non primary hits 5056930 Unmapped reads: 2305876 mapq < mapq_cut (non-unique): 1879823 mapq >= mapq_cut (unique): 41930680 Read-1: 20966726 Read-2: 20963954 Reads map to '+': 20965344 Reads map to '-': 20965336 Non-splice reads: 29827564 Splice reads: 12103116 Reads mapped in proper pairs: 41925760 Proper-paired reads map to different chrom:0