#================================================== #All numbers are READ count #================================================== Total records: 99731556 QC failed: 0 Optical/PCR duplicate: 49266748 Non primary hits 7382314 Unmapped reads: 3816697 mapq < mapq_cut (non-unique): 2001469 mapq >= mapq_cut (unique): 37264328 Read-1: 18635834 Read-2: 18628494 Reads map to '+': 18632115 Reads map to '-': 18632213 Non-splice reads: 25320723 Splice reads: 11943605 Reads mapped in proper pairs: 37252378 Proper-paired reads map to different chrom:0