#================================================== #All numbers are READ count #================================================== Total records: 93367974 QC failed: 0 Optical/PCR duplicate: 32749676 Non primary hits 4672598 Unmapped reads: 8409014 mapq < mapq_cut (non-unique): 1839152 mapq >= mapq_cut (unique): 45697534 Read-1: 22852555 Read-2: 22844979 Reads map to '+': 22848751 Reads map to '-': 22848783 Non-splice reads: 33199781 Splice reads: 12497753 Reads mapped in proper pairs: 45686270 Proper-paired reads map to different chrom:0