#================================================== #All numbers are READ count #================================================== Total records: 81025264 QC failed: 0 Optical/PCR duplicate: 29256063 Non primary hits 5235112 Unmapped reads: 3286887 mapq < mapq_cut (non-unique): 1813497 mapq >= mapq_cut (unique): 41433705 Read-1: 20720114 Read-2: 20713591 Reads map to '+': 20716871 Reads map to '-': 20716834 Non-splice reads: 28872104 Splice reads: 12561601 Reads mapped in proper pairs: 41423226 Proper-paired reads map to different chrom:0