#================================================== #All numbers are READ count #================================================== Total records: 103900701 QC failed: 0 Optical/PCR duplicate: 39806023 Non primary hits 6639057 Unmapped reads: 7240043 mapq < mapq_cut (non-unique): 2216468 mapq >= mapq_cut (unique): 47999110 Read-1: 24008483 Read-2: 23990627 Reads map to '+': 23999343 Reads map to '-': 23999767 Non-splice reads: 34068169 Splice reads: 13930941 Reads mapped in proper pairs: 47971926 Proper-paired reads map to different chrom:0