#================================================== #All numbers are READ count #================================================== Total records: 120926247 QC failed: 0 Optical/PCR duplicate: 42272090 Non primary hits 25376971 Unmapped reads: 2593917 mapq < mapq_cut (non-unique): 2776833 mapq >= mapq_cut (unique): 47906436 Read-1: 23955129 Read-2: 23951307 Reads map to '+': 23953208 Reads map to '-': 23953228 Non-splice reads: 35745388 Splice reads: 12161048 Reads mapped in proper pairs: 47898482 Proper-paired reads map to different chrom:0