#================================================== #All numbers are READ count #================================================== Total records: 91851677 QC failed: 0 Optical/PCR duplicate: 32260433 Non primary hits 4238453 Unmapped reads: 9131441 mapq < mapq_cut (non-unique): 1755293 mapq >= mapq_cut (unique): 44466057 Read-1: 22236020 Read-2: 22230037 Reads map to '+': 22233001 Reads map to '-': 22233056 Non-splice reads: 31250817 Splice reads: 13215240 Reads mapped in proper pairs: 44456560 Proper-paired reads map to different chrom:0