#================================================== #All numbers are READ count #================================================== Total records: 101446533 QC failed: 0 Optical/PCR duplicate: 53918388 Non primary hits 7498783 Unmapped reads: 3206967 mapq < mapq_cut (non-unique): 1719245 mapq >= mapq_cut (unique): 35103150 Read-1: 17552654 Read-2: 17550496 Reads map to '+': 17551550 Reads map to '-': 17551600 Non-splice reads: 25988627 Splice reads: 9114523 Reads mapped in proper pairs: 35098578 Proper-paired reads map to different chrom:0