#================================================== #All numbers are READ count #================================================== Total records: 126050974 QC failed: 0 Optical/PCR duplicate: 50055234 Non primary hits 7332344 Unmapped reads: 14904677 mapq < mapq_cut (non-unique): 2296387 mapq >= mapq_cut (unique): 51462332 Read-1: 25735220 Read-2: 25727112 Reads map to '+': 25731194 Reads map to '-': 25731138 Non-splice reads: 36371605 Splice reads: 15090727 Reads mapped in proper pairs: 51450798 Proper-paired reads map to different chrom:0