#================================================== #All numbers are READ count #================================================== Total records: 214727511 QC failed: 0 Optical/PCR duplicate: 138896755 Non primary hits 13339599 Unmapped reads: 15040988 mapq < mapq_cut (non-unique): 2233190 mapq >= mapq_cut (unique): 45216979 Read-1: 22612778 Read-2: 22604201 Reads map to '+': 22608487 Reads map to '-': 22608492 Non-splice reads: 29356967 Splice reads: 15860012 Reads mapped in proper pairs: 45205904 Proper-paired reads map to different chrom:0