#================================================== #All numbers are READ count #================================================== Total records: 106333620 QC failed: 0 Optical/PCR duplicate: 37879696 Non primary hits 6114768 Unmapped reads: 8856645 mapq < mapq_cut (non-unique): 2208108 mapq >= mapq_cut (unique): 51274403 Read-1: 25641482 Read-2: 25632921 Reads map to '+': 25637195 Reads map to '-': 25637208 Non-splice reads: 35694051 Splice reads: 15580352 Reads mapped in proper pairs: 51262716 Proper-paired reads map to different chrom:0