#================================================== #All numbers are READ count #================================================== Total records: 65771298 QC failed: 0 Optical/PCR duplicate: 27416981 Non primary hits 3618202 Unmapped reads: 3994057 mapq < mapq_cut (non-unique): 1316799 mapq >= mapq_cut (unique): 29425259 Read-1: 14715000 Read-2: 14710259 Reads map to '+': 14712664 Reads map to '-': 14712595 Non-splice reads: 21445959 Splice reads: 7979300 Reads mapped in proper pairs: 29417784 Proper-paired reads map to different chrom:0