#================================================== #All numbers are READ count #================================================== Total records: 137643361 QC failed: 0 Optical/PCR duplicate: 83881689 Non primary hits 10191907 Unmapped reads: 7798324 mapq < mapq_cut (non-unique): 1636521 mapq >= mapq_cut (unique): 34134920 Read-1: 17069346 Read-2: 17065574 Reads map to '+': 17067426 Reads map to '-': 17067494 Non-splice reads: 25892410 Splice reads: 8242510 Reads mapped in proper pairs: 34126082 Proper-paired reads map to different chrom:0