#================================================== #All numbers are READ count #================================================== Total records: 126029709 QC failed: 0 Optical/PCR duplicate: 59120949 Non primary hits 6798747 Unmapped reads: 11310349 mapq < mapq_cut (non-unique): 2017755 mapq >= mapq_cut (unique): 46781909 Read-1: 23396798 Read-2: 23385111 Reads map to '+': 23390858 Reads map to '-': 23391051 Non-splice reads: 33958331 Splice reads: 12823578 Reads mapped in proper pairs: 46761084 Proper-paired reads map to different chrom:0