#================================================== #All numbers are READ count #================================================== Total records: 138335336 QC failed: 0 Optical/PCR duplicate: 53505238 Non primary hits 13568862 Unmapped reads: 14242764 mapq < mapq_cut (non-unique): 2997918 mapq >= mapq_cut (unique): 54020554 Read-1: 27020349 Read-2: 27000205 Reads map to '+': 27010152 Reads map to '-': 27010402 Non-splice reads: 38562079 Splice reads: 15458475 Reads mapped in proper pairs: 53987022 Proper-paired reads map to different chrom:0