#================================================== #All numbers are READ count #================================================== Total records: 94144980 QC failed: 0 Optical/PCR duplicate: 30660935 Non primary hits 4451912 Unmapped reads: 10898286 mapq < mapq_cut (non-unique): 1889413 mapq >= mapq_cut (unique): 46244434 Read-1: 23125472 Read-2: 23118962 Reads map to '+': 23122149 Reads map to '-': 23122285 Non-splice reads: 33345930 Splice reads: 12898504 Reads mapped in proper pairs: 46234218 Proper-paired reads map to different chrom:0