#================================================== #All numbers are READ count #================================================== Total records: 79699365 QC failed: 0 Optical/PCR duplicate: 32897638 Non primary hits 4829659 Unmapped reads: 4455770 mapq < mapq_cut (non-unique): 1559400 mapq >= mapq_cut (unique): 35956898 Read-1: 17982460 Read-2: 17974438 Reads map to '+': 17978366 Reads map to '-': 17978532 Non-splice reads: 25611175 Splice reads: 10345723 Reads mapped in proper pairs: 35946566 Proper-paired reads map to different chrom:0