#================================================== #All numbers are READ count #================================================== Total records: 110589576 QC failed: 0 Optical/PCR duplicate: 36792641 Non primary hits 7003156 Unmapped reads: 9256473 mapq < mapq_cut (non-unique): 2505194 mapq >= mapq_cut (unique): 55032112 Read-1: 27519224 Read-2: 27512888 Reads map to '+': 27515955 Reads map to '-': 27516157 Non-splice reads: 36301588 Splice reads: 18730524 Reads mapped in proper pairs: 55022892 Proper-paired reads map to different chrom:0