#================================================== #All numbers are READ count #================================================== Total records: 95938117 QC failed: 0 Optical/PCR duplicate: 40776151 Non primary hits 5669977 Unmapped reads: 6313842 mapq < mapq_cut (non-unique): 1741675 mapq >= mapq_cut (unique): 41436472 Read-1: 20721195 Read-2: 20715277 Reads map to '+': 20718154 Reads map to '-': 20718318 Non-splice reads: 30234379 Splice reads: 11202093 Reads mapped in proper pairs: 41423696 Proper-paired reads map to different chrom:0