#================================================== #All numbers are READ count #================================================== Total records: 78358953 QC failed: 0 Optical/PCR duplicate: 22359450 Non primary hits 4213915 Unmapped reads: 9622506 mapq < mapq_cut (non-unique): 1781902 mapq >= mapq_cut (unique): 40381180 Read-1: 20193917 Read-2: 20187263 Reads map to '+': 20190538 Reads map to '-': 20190642 Non-splice reads: 27427784 Splice reads: 12953396 Reads mapped in proper pairs: 40371350 Proper-paired reads map to different chrom:0