#================================================== #All numbers are READ count #================================================== Total records: 111515108 QC failed: 0 Optical/PCR duplicate: 63737720 Non primary hits 10110754 Unmapped reads: 4383679 mapq < mapq_cut (non-unique): 1642477 mapq >= mapq_cut (unique): 31640478 Read-1: 15820925 Read-2: 15819553 Reads map to '+': 15820230 Reads map to '-': 15820248 Non-splice reads: 23826981 Splice reads: 7813497 Reads mapped in proper pairs: 31632972 Proper-paired reads map to different chrom:0