#================================================== #All numbers are READ count #================================================== Total records: 98911554 QC failed: 0 Optical/PCR duplicate: 30440306 Non primary hits 5602778 Unmapped reads: 5094696 mapq < mapq_cut (non-unique): 2354018 mapq >= mapq_cut (unique): 55419756 Read-1: 27713231 Read-2: 27706525 Reads map to '+': 27709773 Reads map to '-': 27709983 Non-splice reads: 37574552 Splice reads: 17845204 Reads mapped in proper pairs: 55409678 Proper-paired reads map to different chrom:0