#================================================== #All numbers are READ count #================================================== Total records: 68440574 QC failed: 0 Optical/PCR duplicate: 36772580 Non primary hits 7787152 Unmapped reads: 727703 mapq < mapq_cut (non-unique): 1242803 mapq >= mapq_cut (unique): 21910336 Read-1: 10956238 Read-2: 10954098 Reads map to '+': 10955170 Reads map to '-': 10955166 Non-splice reads: 15815001 Splice reads: 6095335 Reads mapped in proper pairs: 21905230 Proper-paired reads map to different chrom:0