#================================================== #All numbers are READ count #================================================== Total records: 156530014 QC failed: 0 Optical/PCR duplicate: 80265657 Non primary hits 8896578 Unmapped reads: 11679931 mapq < mapq_cut (non-unique): 2318270 mapq >= mapq_cut (unique): 53369578 Read-1: 26692598 Read-2: 26676980 Reads map to '+': 26684824 Reads map to '-': 26684754 Non-splice reads: 37355231 Splice reads: 16014347 Reads mapped in proper pairs: 53344268 Proper-paired reads map to different chrom:0