#================================================== #All numbers are READ count #================================================== Total records: 90417433 QC failed: 0 Optical/PCR duplicate: 31947571 Non primary hits 5723975 Unmapped reads: 2350697 mapq < mapq_cut (non-unique): 2199801 mapq >= mapq_cut (unique): 48195389 Read-1: 24099006 Read-2: 24096383 Reads map to '+': 24097631 Reads map to '-': 24097758 Non-splice reads: 32580350 Splice reads: 15615039 Reads mapped in proper pairs: 48190092 Proper-paired reads map to different chrom:0